User Guide

• Simulation setup
  • Berendsen barostat
• Molecules
  • Fixed concentration boundary conditions
• Interaction potentials
• Reactions
  • Binding reactions
  • Fusion reactions
  • Enzymatic reactions
  • Fission reactions
  • Conversion reactions
• Compartments
  • Meshes
  • Molecule collision types
• Molecule distribution
  • Distribute in volume
  • Distribute on surface
  • Release events
• Observables
• Run simulation
• Evaluation
  • Reading and plotting data
  • Analyzing data
• Blender Add-on
  • Linux users